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PF3D7_0821500 ribosomal RNA small subunit methyltransferase NEP1, putative [ Plasmodium falciparum 3D7 ]

Gene ID: 2655492, updated on 12-Sep-2024

Summary

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Gene symbol
PF3D7_0821500
Gene description
ribosomal RNA small subunit methyltransferase NEP1, putative
Locus tag
PF3D7_0821500
See related
PlasmoDB:PF3D7_0821500; VEuPathDB:PF3D7_0821500
Gene type
protein coding
RNA name
ribosomal RNA small subunit methyltransferase NEP1, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
Orthologs
all
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Genomic context

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See PF3D7_0821500 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_004329.3 (967901..968740, complement)

Chromosome 8 - NC_004329.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DHX36, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene polyribonucleotide 5'-hydroxyl-kinase Clp1, putative Neighboring gene 60S ribosomal protein L22, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004329.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by GeneDB

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables rRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ribosomal small subunit biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of small-subunit processome ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ribosomal RNA small subunit methyltransferase NEP1, putative
XP_001349310.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004329.3 Reference assembly

    Range
    967901..968740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001349274.1 → XP_001349310.1  ribosomal RNA small subunit methyltransferase NEP1, putative [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001349310.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q8IB49, W7FEI7, W7G7S2, W7JDQ1, W7KHD7
    Conserved Domains (1) summary
    cd18088
    Location:69 → 273
    Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1
Nucleotide Protein
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