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Zscan12 zinc finger and SCAN domain containing 12 [ Rattus norvegicus (Norway rat) ]

Gene ID: 266716, updated on 2-Nov-2024

Summary

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Official Symbol
Zscan12provided by RGD
Official Full Name
zinc finger and SCAN domain containing 12provided by RGD
Primary source
RGD:628738
See related
AllianceGenome:RGD:628738
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp96
Summary
Predicted to be located in nucleus. Orthologous to human ZSCAN12 (zinc finger and SCAN domain containing 12). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 79.3), Heart (RPKM 72.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zscan12 in Genome Data Viewer
Location:
17p11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (47942976..47948930, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (43247250..43253206, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (45279171..45285069, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097923 Neighboring gene piggyBac transposable element derived 1 Neighboring gene zinc finger with KRAB and SCAN domains 3 Neighboring gene uncharacterized LOC120097820 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of a novel zinc finger protein (rZFP96) in the rat corpus luteum. Lareu RR, et al. Biochim Biophys Acta, 2005 Dec 30. PMID 16426687
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 12
Names
zinc finger protein 96

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430357.1 → NP_001417286.1  zinc finger and SCAN domain-containing protein 12

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72

  2. NM_001430358.1 → NP_001417287.1  zinc finger and SCAN domain-containing protein 12

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72

  3. NM_001430359.1 → NP_001417288.1  zinc finger and SCAN domain-containing protein 12

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    47942976..47948930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039096200.2 → XP_038952128.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72
    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_039096198.2 → XP_038952126.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_039096202.2 → XP_038952130.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_039096201.2 → XP_038952129.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72
    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  5. XM_039096199.2 → XP_038952127.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  6. XM_039096197.2 → XP_038952125.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72
    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  7. XM_039096196.2 → XP_038952124.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72
    Conserved Domains (4) summary
    smart00431
    Location:43 → 155
    SCAN; leucine rich region
    COG5048
    Location:209 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:457 → 479
    zf-C2H2; Zinc finger, C2H2 type

  8. XM_063276951.1 → XP_063133021.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72

  9. XM_063276950.1 → XP_063133020.1  zinc finger and SCAN domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K4Z9, A6KN72

  10. XM_039096204.1 → XP_038952132.1  zinc finger and SCAN domain-containing protein 12 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AD40, A6KN73
    Conserved Domains (4) summary
    COG5048
    Location:175 → 248
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:68 → 88
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:80 → 104
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:120 → 175
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153475.1: Suppressed sequence

    Description
    NM_153475.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

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