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RNU6-6P RNA, U6 small nuclear 6, pseudogene [ Homo sapiens (human) ]

Gene ID: 26826, updated on 2-Nov-2024

Summary

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Official Symbol
RNU6-6Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 6, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:10228
See related
Ensembl:ENSG00000272055 AllianceGenome:HGNC:10228
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U6-6; RNU6B; RNU6-6
Summary
Predicted to be located in nuclear speck. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RNU6-6P in Genome Data Viewer
Location:
10p13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (13217269..13217375)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (13259269..13259375)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr10:13203307-13203620 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2151 Neighboring gene ribosomal protein L36a pseudogene 36 Neighboring gene Sharpr-MPRA regulatory region 2216 Neighboring gene minichromosome maintenance 10 replication initiation factor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:13276077-13276987 Neighboring gene upper zone of growth plate and cartilage matrix associated Neighboring gene phytanoyl-CoA 2-hydroxylase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:13341054-13341674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2152

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary structure identification of snRNAs present in highly purified snRNPs from HeLa cells. Sri-Widada J, et al. Mol Biol Rep, 1981 Nov 30. PMID 6173742
  2. Identification of suitable reference genes for hepatic microRNA quantitation. Lamba V, et al. BMC Res Notes, 2014 Mar 7. PMID 24606728, Free PMC Article
  3. Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. Rasche N, et al. EMBO J, 2012 Mar 21. PMID 22246180, Free PMC Article
  4. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. Domitrovich AM, et al. Nucleic Acids Res, 2003 May 1. PMID 12711679, Free PMC Article
  5. Common genetic variation and performance on standardized cognitive tests. Cirulli ET, et al. Eur J Hum Genet, 2010 Jul. PMID 20125193, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • RNA, U6B small nuclear

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034215.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    13217269..13217375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_002752.2: Suppressed sequence

    Description
    NR_002752.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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