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SNORD3P3 small nucleolar RNA, C/D box 3 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 26843, updated on 2-Nov-2024

Summary

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Official Symbol
SNORD3P3provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 3 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:10177
See related
AllianceGenome:HGNC:10177
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U3; U3.5; u3.7; RNU3P3
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SNORD3P3 in Genome Data Viewer
Location:
14q31.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (85271932..85272061)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (79485611..79485740)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (85738276..85738405)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 3 pseudogene Neighboring gene uncharacterized LOC105370604 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:85645115-85645653 Neighboring gene long intergenic non-protein coding RNA 2329 Neighboring gene long intergenic non-protein coding RNA 911

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. U3 snoRNA inter-regulates with DDX21 in the perichromosomal region to control mitosis. Jiang Y, et al. Cell Death Dis, 2024 May 17. PMID 38760378, Free PMC Article
  2. Direct repeats flank three small nuclear RNA pseudogenes in the human genome. Van Arsdell SW, et al. Cell, 1981 Oct. PMID 6173130
  3. Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. Bernstein LB, et al. Cell, 1983 Feb. PMID 6186397
  4. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. U3 snoRNA inter-regulates with DDX21 in the perichromosomal region to control mitosis.
    Title: U3 snoRNA inter-regulates with DDX21 in the perichromosomal region to control mitosis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RNA, U3 small nucleolar pseudogene 3

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145983.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157957

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    85271932..85272061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    79485611..79485740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001254.2: Suppressed sequence

    Description
    NG_001254.2: This RefSeq was removed because it is now thought that this gene represents a functional snoRNA.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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