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RNVU1-7 RNA, variant U1 small nuclear 7 [ Homo sapiens (human) ]

Gene ID: 26864, updated on 3-Nov-2024

Summary

Official Symbol
RNVU1-7provided by HGNC
Official Full Name
RNA, variant U1 small nuclear 7provided by HGNC
Primary source
HGNC:HGNC:37500
See related
Ensembl:ENSG00000206585 AllianceGenome:HGNC:37500
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
vU1.7; vU1.9; RNU1-6; RNU1-9; RNU1-6P; RNU1-9P; RNVU1-9; RNU1-26P
Summary
Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See RNVU1-7 in Genome Data Viewer
Location:
1q21.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148038753..148038916, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146768502..146768665)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147511004..147511167, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 89B Neighboring gene PDZ domain containing 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145944387-145945098 Neighboring gene RNA, U1 small nuclear 129, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145963909-145964683 Neighboring gene tRNA-Gln (anticodon CTG) 3-2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:147510508-147511043 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:147511044-147511580 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145969873-145970414 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:147520877-147521378 Neighboring gene tRNA-Asn (anticodon GTT) 9-2 Neighboring gene PDE4DIP pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:147532116-147532616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:147532617-147533117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:146009957-146010457

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • RNA, U1 small nuclear 26, pseudogene
  • RNA, U1 small nuclear 6, pseudogene
  • RNA, U1 small nuclear 9, pseudogene
  • RNA, variant U1 small nuclear 9

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004426.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC239803
    Related
    ENST00000383858.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148038753..148038916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    700520..700683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    146768502..146768665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)