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Selenov selenoprotein V [ Mus musculus (house mouse) ]

Gene ID: 280621, updated on 2-Nov-2024

Summary

Official Symbol
Selenovprovided by MGI
Official Full Name
selenoprotein Vprovided by MGI
Primary source
MGI:MGI:3608324
See related
Ensembl:ENSMUSG00000046750 AllianceGenome:MGI:3608324
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Selv
Summary
This gene encodes a selenoprotein containing a selenocysteine (Sec) residue, which is encoded by the UGA codon that normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, the Sec insertion sequence (SECIS) element, which is necessary for the recognition of UGA as a Sec codon rather than as a stop signal. This protein is specifically expressed in the testis. It belongs to the SelWTH family, which possesses a thioredoxin-like fold and a conserved CxxU (C is cysteine, U is Sec) motif, suggesting a redox function for this gene. [provided by RefSeq, Apr 2017]
Expression
Restricted expression toward testis adult (RPKM 175.4) See more
Orthologs
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Genomic context

See Selenov in Genome Data Viewer
Location:
7 A3; 7 16.67 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27984077..27990611, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (28284652..28291186, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene EP300 interacting inhibitor of differentiation 2 Neighboring gene STARR-positive B cell enhancer ABC_E4912 Neighboring gene EP300 interacting inhibitor of differentiation 2B Neighboring gene delta like canonical Notch ligand 3 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene STARR-positive B cell enhancer ABC_E6527 Neighboring gene predicted gene, 51445

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175033.4NP_778198.2  selenoprotein V

    See identical proteins and their annotated locations for NP_778198.2

    Status: REVIEWED

    Source sequence(s)
    AK077113, BC089491
    Consensus CDS
    CCDS39855.1
    UniProtKB/TrEMBL
    D3YXG1, Q5FWB9
    Related
    ENSMUSP00000050372.9, ENSMUST00000056589.15
    Conserved Domains (1) summary
    TIGR02174
    Location:247320
    CXXU_selWTH; selT/selW/selH selenoprotein domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    27984077..27990611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)