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Yipf3 Yip1 domain family, member 3 [ Mus musculus (house mouse) ]

Gene ID: 28064, updated on 2-Nov-2024

Summary

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Official Symbol
Yipf3provided by MGI
Official Full Name
Yip1 domain family, member 3provided by MGI
Primary source
MGI:MGI:106280
See related
Ensembl:ENSMUSG00000071074 AllianceGenome:MGI:106280
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KLIP1; C6orf109; D17Wsu94e
Summary
Predicted to be involved in cell differentiation. Predicted to be located in transport vesicle. Predicted to be active in Golgi apparatus. Is expressed in extraembryonic component. Orthologous to human YIPF3 (Yip1 domain family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 117.6), colon adult (RPKM 93.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Yipf3 in Genome Data Viewer
Location:
17 C; 17 22.9 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (46559019..46563474)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (46248080..46252537)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene exportin 5 Neighboring gene predicted gene, 22474 Neighboring gene STARR-positive B cell enhancer ABC_E11645 Neighboring gene polymerase (RNA) I polypeptide C Neighboring gene leucine rich repeat containing 73 Neighboring gene tight junction associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of a novel hematopoietic marker expressed from early embryonic hematopoietic stem cells to adult mature lineages. Prost S, et al. Blood Cells Mol Dis, 2002 Sep-Oct. PMID 12490290
  2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, et al. Hum Mol Genet, 1998 Nov. PMID 9811942
  3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC118671

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in transport vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in transport vesicle ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein YIPF3
Names
YIP1 family member 3
killer lineage protein 1
natural killer cell-specific antigen KLIP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001414043.1 → NP_001400972.1  protein YIPF3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC116739

  2. NM_001414044.1 → NP_001400973.1  protein YIPF3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC116739

  3. NM_001414045.1 → NP_001400974.1  protein YIPF3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC116739

  4. NM_001414046.1 → NP_001400975.1  protein YIPF3 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC116739

  5. NM_001414047.1 → NP_001400976.1  protein YIPF3 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC116739

  6. NM_001414050.1 → NP_001400979.1  protein YIPF3 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC116739

  7. NM_001414051.1 → NP_001400980.1  protein YIPF3 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC116739

  8. NM_001414052.1 → NP_001400981.1  protein YIPF3 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC116739

  9. NM_001414153.1 → NP_001401082.1  protein YIPF3 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC116739

  10. NM_001414154.1 → NP_001401083.1  protein YIPF3 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC116739

  11. NM_001414155.1 → NP_001401084.1  protein YIPF3 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AC116739

  12. NM_145353.3 → NP_663328.2  protein YIPF3 isoform 1

    See identical proteins and their annotated locations for NP_663328.2

    Status: VALIDATED

    Source sequence(s)
    AC116739
    Consensus CDS
    CCDS28823.1
    UniProtKB/Swiss-Prot
    Q3UDR8, Q8C998, Q8K5D1, Q8VCS2
    Related
    ENSMUSP00000092897.4, ENSMUST00000095263.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    46559019..46563474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UDR8.1 GenPept UniProtKB/Swiss-Prot:Q3UDR8

Gene LinkOut

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