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LINC02762 long intergenic non-protein coding RNA 2762 [ Homo sapiens (human) ]

Gene ID: 283140, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02762provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2762provided by HGNC
Primary source
HGNC:HGNC:27443
See related
Ensembl:ENSG00000250303 AllianceGenome:HGNC:27443
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02762 in Genome Data Viewer
Location:
11q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (112270749..112362534)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (112281059..112372973)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (112141472..112233257)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100132686 Neighboring gene placenta expressed transcript 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5533 Neighboring gene ST13, Hsp70 interacting protein pseudogene 10 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:112160899-112161647 Neighboring gene NANOG hESC enhancer GRCh37_chr11:112178337-112178838 Neighboring gene uncharacterized LOC107984388 Neighboring gene RNA, U6 small nuclear 44, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:112236216-112237415 Neighboring gene NANOG hESC enhancer GRCh37_chr11:112283075-112283627 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:112332561-112332759 Neighboring gene uncharacterized LOC107984389 Neighboring gene ribosomal protein L23a pseudogene 62

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126004.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK095275, AP002841
    Related
    ENST00000504610.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    112270749..112362534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    112281059..112372973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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