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LINC02873 long intergenic non-protein coding RNA 2873 [ Homo sapiens (human) ]

Gene ID: 283171, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02873provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2873provided by HGNC
Primary source
HGNC:HGNC:26805
See related
Ensembl:ENSG00000175728 AllianceGenome:HGNC:26805
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf44
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See LINC02873 in Genome Data Viewer
Location:
11q24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (130672956..130717352)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (130708702..130753098)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (130542851..130587247)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene 11q24.3 proximal HERV-mediated recombination region Neighboring gene BCL2 antagonist/killer 1 pseudogene 2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:130470970-130471655 Neighboring gene microRNA 8052 Neighboring gene uncharacterized LOC105369575 Neighboring gene 11q24.3 distal HERV-mediated recombination region Neighboring gene NANOG hESC enhancer GRCh37_chr11:130628565-130629153 Neighboring gene uncharacterized LOC105369576 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:130651600-130652799

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Other Names

  • uncharacterized protein C11orf44

Clone Names

  • FLJ39058

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164144.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003486
    Related
    ENST00000317019.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    130672956..130717352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    130708702..130753098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001271983.1: Suppressed sequence

    Description
    NM_001271983.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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