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TMEM272 transmembrane protein 272 [ Homo sapiens (human) ]

Gene ID: 283521, updated on 2-Nov-2024

Summary

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Official Symbol
TMEM272provided by HGNC
Official Full Name
transmembrane protein 272provided by HGNC
Primary source
HGNC:HGNC:26737
See related
Ensembl:ENSG00000281106 AllianceGenome:HGNC:26737
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00282; NCRNA00282
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See TMEM272 in Genome Data Viewer
Location:
13q14.3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (51813347..51934366, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (51028047..51149036, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (52387483..52419313, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene WD repeat and FYVE domain containing 2 Neighboring gene uncharacterized LOC124903177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7778 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32930 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5376 Neighboring gene dehydrogenase/reductase 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:52371189-52371717 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5377 Neighboring gene uncharacterized LOC107984561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:52423314-52423814 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:52435707-52436906 Neighboring gene coiled-coil domain containing 70 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:52501865-52503064 Neighboring gene CTAGE family member 3, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7784 Neighboring gene ATPase copper transporting beta Neighboring gene Sharpr-MPRA regulatory region 15635 Neighboring gene fatty acid binding protein 5 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5379 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7786 Neighboring gene ALG11 alpha-1,2-mannosyltransferase Neighboring gene UTP14C small subunit processome component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • FLJ37307

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 272
Names
long intergenic non-protein coding RNA 282

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351003.2 → NP_001337932.1  transmembrane protein 272 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL162377, BM661920, DA339105
    Consensus CDS
    CCDS86353.1
    UniProtKB/Swiss-Prot
    A0A1B0GTI8, A0A1B0GW01
    Related
    ENSP00000490718.2, ENST00000629372.3

  2. NM_001351005.2 → NP_001337934.1  transmembrane protein 272 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL162377, BM661920, DA226291

  3. NM_001351006.2 → NP_001337935.1  transmembrane protein 272 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL162377, BM661920, DA338627

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    51813347..51934366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047430278.1 → XP_047286234.1  transmembrane protein 272 isoform X1

  2. XM_047430280.1 → XP_047286236.1  transmembrane protein 272 isoform X2

    UniProtKB/Swiss-Prot
    A0A1B0GTI8, A0A1B0GW01

  3. XM_047430279.1 → XP_047286235.1  transmembrane protein 272 isoform X2

    UniProtKB/Swiss-Prot
    A0A1B0GTI8, A0A1B0GW01

  4. XM_047430281.1 → XP_047286237.1  transmembrane protein 272 isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    51028047..51149036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054374472.1 → XP_054230447.1  transmembrane protein 272 isoform X1

  2. XM_054374474.1 → XP_054230449.1  transmembrane protein 272 isoform X2

    UniProtKB/Swiss-Prot
    A0A1B0GTI8, A0A1B0GW01

  3. XM_054374473.1 → XP_054230448.1  transmembrane protein 272 isoform X2

    UniProtKB/Swiss-Prot
    A0A1B0GTI8, A0A1B0GW01

  4. XM_054374475.1 → XP_054230450.1  transmembrane protein 272 isoform X3

  5. XM_054374471.1 → XP_054230446.1  transmembrane protein 272 isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178515.2: Suppressed sequence

    Description
    NM_178515.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GTI8.3 GenPept UniProtKB/Swiss-Prot:A0A1B0GTI8

Gene LinkOut

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