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LINC00640 long intergenic non-protein coding RNA 640 [ Homo sapiens (human) ]

Gene ID: 283553, updated on 10-Oct-2023

Summary

Official Symbol
LINC00640provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 640provided by HGNC
Primary source
HGNC:HGNC:44291
See related
AllianceGenome:HGNC:44291
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 2.5) and esophagus (RPKM 0.2) See more
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Genomic context

Location:
14q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (51333393..51365557)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (45540148..45572312)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (51800111..51832275)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903315 Neighboring gene long intergenic non-protein coding RNA 519 Neighboring gene uncharacterized LOC124900595 Neighboring gene uncharacterized LOC105370495 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:51835486-51836070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:51861840-51862340 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:51862502-51863701 Neighboring gene long intergenic non-protein coding RNA 2310 Neighboring gene FERM domain containing 6 Neighboring gene SET pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038358.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG198945, BG220842, BX111479

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    51333393..51365557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    45540148..45572312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)