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GOLGA6L1 golgin A6 family like 1 [ Homo sapiens (human) ]

Gene ID: 283767, updated on 8-Nov-2023

Summary

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Official Symbol
GOLGA6L1provided by HGNC
Official Full Name
golgin A6 family like 1provided by HGNC
Primary source
HGNC:HGNC:37444
See related
Ensembl:ENSG00000273976 AllianceGenome:HGNC:37444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 6.6) See more
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Genomic context

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Location:
15q11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (23127066..23136822, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (20810829..20820625, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (22736246..22746002)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene engulfment and cell motility 2 pseudogene 1 Neighboring gene WAS/WASL-interacting protein family member 3-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:22744007-22744507 Neighboring gene NANOG hESC enhancer GRCh37_chr15:22740333-22740853 Neighboring gene MPHOSPH10 pseudogene 5 Neighboring gene golgin A8 family member D, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 106, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. EVI1 oncoprotein interacts with a large and complex network of proteins and integrates signals through protein phosphorylation. Bard-Chapeau EA, et al. Proc Natl Acad Sci U S A, 2013 Jul 30. PMID 23858473, Free PMC Article
  2. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ36131, FLJ40198

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 1
Names
golgi autoantigen, golgin subfamily a, 6-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001413.3 → NP_001001413.3  golgin subfamily A member 6-like protein 1

    Status: VALIDATED

    Source sequence(s)
    AC116165
    Consensus CDS
    CCDS73699.1
    UniProtKB/Swiss-Prot
    A0A087WU96, Q8N7Z2
    Related
    ENSP00000478478.1, ENST00000614055.2
    Conserved Domains (3) summary
    cl25716
    Location:1 → 50
    Amelogenin; Amelogenin
    cl25751
    Location:5 → 98
    DUF4045; Domain of unknown function (DUF4045)
    cl26511
    Location:185 → 658
    Neuromodulin_N; Gap junction protein N-terminal region

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    23127066..23136822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    4021809..4031548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187603.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    227574..237330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187659.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    96576..106332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    20810829..20820625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054377744.1 → XP_054233719.1  golgin subfamily A member 6-like protein 1 isoform X2

  2. XM_054377743.1 → XP_054233718.1  golgin subfamily A member 6-like protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N7Z2.3 GenPept UniProtKB/Swiss-Prot:Q8N7Z2

Gene LinkOut

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