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DLGAP1-AS5 DLGAP1 antisense RNA 5 [ Homo sapiens (human) ]

Gene ID: 284215, updated on 10-Oct-2023

Summary

Official Symbol
DLGAP1-AS5provided by HGNC
Official Full Name
DLGAP1 antisense RNA 5provided by HGNC
Primary source
HGNC:HGNC:27586
See related
Ensembl:ENSG00000261520 AllianceGenome:HGNC:27586
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 3.9), ovary (RPKM 0.3) and 2 other tissues See more
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Genomic context

Location:
18p11.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (4264602..4296000)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (4424572..4455984)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (4264602..4296000)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene DLG associated protein 1 Neighboring gene DLGAP1 antisense RNA 4 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:4017491-4018172 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 66 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:4117736-4118323 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:4118324-4118910 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:4119078-4119849 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:4124501-4125480 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:4125481-4126460 Neighboring gene uncharacterized LOC124904239 Neighboring gene Sharpr-MPRA regulatory region 11006 Neighboring gene NANOG hESC enhancer GRCh37_chr18:4195745-4196246 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47861 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47879 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:4233399-4234316 Neighboring gene Sharpr-MPRA regulatory region 437 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:4407683-4407856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9259 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:4477591-4478233 Neighboring gene uncharacterized LOC105371968 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:4494750-4495406 Neighboring gene elongin C pseudogene 27

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036489.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK098180, AP005208, DA301744
    Related
    ENST00000565811.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    4264602..4296000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    4424572..4455984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)