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LOC284788 uncharacterized LOC284788 [ Homo sapiens (human) ]

Gene ID: 284788, updated on 10-Oct-2023

Summary

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Gene symbol
LOC284788
Gene description
uncharacterized LOC284788
See related
Ensembl:ENSG00000204684
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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See LOC284788 in Genome Data Viewer
Location:
20p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22400333..22420643, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22457882..22478213, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22380971..22401281, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372561 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:22245080-22246279 Neighboring gene long intergenic non-protein coding RNA 1427 Neighboring gene Sharpr-MPRA regulatory region 5495 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:22370619-22371818 Neighboring gene VISTA enhancer hs2547 Neighboring gene Sharpr-MPRA regulatory region 10803 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:22392180-22393379 Neighboring gene FOXA motif-containing MPRA enhancer 246 Neighboring gene uncharacterized LOC105372562 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:22436641-22437455 Neighboring gene uncharacterized LOC105372563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027089.2 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    BC033532, KF456862
    Related
    ENST00000377121.1

  2. NR_027090.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (2) omits an exon compared to variant 1.
    Source sequence(s)
    BC033532, BC144090
    Related
    ENST00000664479.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    22400333..22420643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    22457882..22478213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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