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LINC01697 long intergenic non-protein coding RNA 1697 [ Homo sapiens (human) ]

Gene ID: 284825, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01697provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1697provided by HGNC
Primary source
HGNC:HGNC:52485
See related
Ensembl:ENSG00000232079 AllianceGenome:HGNC:52485
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 3.3), kidney (RPKM 2.1) and 5 other tissues See more
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Genomic context

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See LINC01697 in Genome Data Viewer
Location:
21q21.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (28048414..28137609)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (26411177..26500371)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (29420733..29509928)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 113 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:29390498-29390664 Neighboring gene long intergenic non-protein coding RNA 314 Neighboring gene long intergenic non-protein coding RNA 1695 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:29697851-29698465 Neighboring gene long intergenic non-protein coding RNA 161 Neighboring gene N-6 adenine-specific DNA methyltransferase 1 Neighboring gene Sharpr-MPRA regulatory region 7516 Neighboring gene uncharacterized LOC124905067

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. Hwang SJ, et al. BMC Med Genet, 2007 Sep 19. PMID 17903292, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126010.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK093119, AL035610
    Related
    ENST00000426534.2

  2. NR_126011.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in both the 5' and 3' exon structures, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AJ006995, CD515480
    Related
    ENST00000436878.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    28048414..28137609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    26411177..26500371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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