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LINC02995 long intergenic non-protein coding RNA 2995 [ Homo sapiens (human) ]

Gene ID: 285593, updated on 28-Oct-2024

Summary

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Official Symbol
LINC02995provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2995provided by HGNC
Primary source
HGNC:HGNC:27744
See related
Ensembl:ENSG00000253955 AllianceGenome:HGNC:27744
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), fat (RPKM 0.2) and 8 other tissues See more
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Genomic context

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See LINC02995 in Genome Data Viewer
Location:
5q35.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (173579634..173585068)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (174119680..174125118)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173006637..173012071)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172839619-172840120 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:172881780-172882979 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:172896379-172896648 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:172920199-172920362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:172925704-172926370 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:172944476-172945227 Neighboring gene uncharacterized LOC105377733 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172971371-172971870 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:172983296-172984024 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:172995751-172996950 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16639 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23655 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:173055264-173056085 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:173059934-173061133 Neighboring gene biorientation of chromosomes in cell division 1 Neighboring gene long intergenic non-protein coding RNA 1863

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Eeles RA, et al. Nat Genet, 2013 Apr. PMID 23535732, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTB-33O18.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027108.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC008663, BC033564
    Related
    ENST00000517299.1

  2. NR_027109.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several exons and its 3' terminal exon extends past a splice site that is used in variant 1.
    Source sequence(s)
    AC008663, BC037875, BE393723
    Related
    ENST00000519897.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    173579634..173585068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    174119680..174125118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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