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LOC285762 uncharacterized LOC285762 [ Homo sapiens (human) ]

Gene ID: 285762, updated on 10-Oct-2023

Summary

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Gene symbol
LOC285762
Gene description
uncharacterized LOC285762
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward spleen (RPKM 1.5) See more
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Genomic context

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Location:
6q22.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (119452547..119491302, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (120638798..120677566, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (119773712..119812467, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1A member 1 Neighboring gene ribosomal protein L13a pseudogene 15 Neighboring gene Sharpr-MPRA regulatory region 13895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17510 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17511 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17512 Neighboring gene RNA, U6 small nuclear 194, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25018 Neighboring gene uncharacterized LOC107986525 Neighboring gene uncharacterized LOC105377975 Neighboring gene NANOG hESC enhancer GRCh37_chr6:119943697-119944198 Neighboring gene uncharacterized LOC105377972 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:120048273-120049107 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:120151441-120151980 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:120151981-120152520 Neighboring gene uncharacterized LOC124901390

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046100.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK097101, AL360215

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    119452547..119491302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    120638798..120677566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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