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LINC01622 long intergenic non-protein coding RNA 1622 [ Homo sapiens (human) ]

Gene ID: 285768, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01622provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1622provided by HGNC
Primary source
HGNC:HGNC:27768
See related
Ensembl:ENSG00000286785 AllianceGenome:HGNC:27768
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 4.0) and kidney (RPKM 1.2) See more
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Genomic context

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See LINC01622 in Genome Data Viewer
Location:
6p25.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (961003..1101332, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (821695..963078, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (961241..1101567, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927691 Neighboring gene uncharacterized LOC124901236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927074-927574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927575-928075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961366-961866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961867-962367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:995434-995953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23860 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23862 Neighboring gene NANOG hESC enhancer GRCh37_chr6:1028326-1028839 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:1066368-1067567 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:1100679-1101878 Neighboring gene NANOG hESC enhancer GRCh37_chr6:1104324-1104899 Neighboring gene uncharacterized LOC124901237 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • TCONS_00011202

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027115.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC037855, BC117448
    Related
    ENST00000662378.1

  2. NR_027116.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    BC037855, BC117448

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    961003..1101332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    821695..963078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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