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LINC02153 long intergenic non-protein coding RNA 2153 [ Homo sapiens (human) ]

Gene ID: 286114, updated on 17-Sep-2024

Summary

Official Symbol
LINC02153provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2153provided by HGNC
Primary source
HGNC:HGNC:27823
See related
Ensembl:ENSG00000253199 AllianceGenome:HGNC:27823
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02153 in Genome Data Viewer
Location:
8p21.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (20973986..20995119)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (21240371..21261493)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (20831497..20852630)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379315 Neighboring gene uncharacterized LOC105379316 Neighboring gene transmembrane protein 97 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 3023 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:20924620-20925236 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:20925197-20926396 Neighboring gene uncharacterized LOC124901902 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:21024826-21026025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27066 Neighboring gene long intergenic non-protein coding RNA 3093

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033894.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015468, AK058067
    Related
    ENST00000522604.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    20973986..20995119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    21240371..21261493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)