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Obp2b odorant binding protein 2B [ Rattus norvegicus (Norway rat) ]

Gene ID: 286933, updated on 2-Nov-2024

Summary

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Official Symbol
Obp2bprovided by RGD
Official Full Name
odorant binding protein 2Bprovided by RGD
Primary source
RGD:708374
See related
EnsemblRapid:ENSRNOG00000048417 AllianceGenome:RGD:708374
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Obp2a; Obp2aa; Ry2g12
Summary
Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Orthologous to human OBP2B (odorant binding protein 2B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Uterus (RPKM 2.2), Testes (RPKM 1.5) and 1 other tissue See more
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Genomic context

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See Obp2b in Genome Data Viewer
Location:
3p13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28960375..28983394)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8582074..8585258)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2969692..3002956)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene progestagen associated endometrial protein like 1 Neighboring gene progestagen associated endometrial protein Neighboring gene lipocalin 3 Neighboring gene von Ebner gland protein 1-like Neighboring gene odorant binding protein 2B like 1 Neighboring gene parkin RBR E3 ubiquitin protein ligase like 1 Neighboring gene eukaryotic translation initiation factor 4E, pseudogene 4 Neighboring gene lipocalin-15 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Molecular cloning of putative odorant-binding and odorant-metabolizing proteins. Dear TN, et al. Biochemistry, 1991 Oct 29. PMID 1931961
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
odorant-binding protein 2a
Names
odorant binding protein 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173148.2 → NP_775171.2  odorant-binding protein 2a precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6MGQ9, M0RDH1, Q63613
    Related
    ENSRNOP00000067672.3, ENSRNOT00000071907.4
    Conserved Domains (1) summary
    cd19414
    Location:26 → 172
    lipocalin_1_3_4_13-like; lipocalin-1, -3, -4, -13 and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    28960375..28983394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283195.1 → XP_063139265.1  odorant-binding protein 2a isoform X5

  2. XM_063283196.1 → XP_063139266.1  odorant-binding protein 2a isoform X5

  3. XM_063283192.1 → XP_063139262.1  odorant-binding protein 2a isoform X5

  4. XM_063283191.1 → XP_063139261.1  odorant-binding protein 2a isoform X5

  5. XM_063283193.1 → XP_063139263.1  odorant-binding protein 2a isoform X5

  6. XM_063283194.1 → XP_063139264.1  odorant-binding protein 2a isoform X5

  7. XM_063283190.1 → XP_063139260.1  odorant-binding protein 2a isoform X4

  8. XM_063283189.1 → XP_063139259.1  odorant-binding protein 2a isoform X3

    UniProtKB/TrEMBL
    A6MGQ9, M0RDH1

  9. XM_063283188.1 → XP_063139258.1  odorant-binding protein 2a isoform X3

    UniProtKB/TrEMBL
    A6MGQ9, M0RDH1

  10. XM_063283187.1 → XP_063139257.1  odorant-binding protein 2a isoform X3

    UniProtKB/TrEMBL
    A6MGQ9, M0RDH1

  11. XM_063283186.1 → XP_063139256.1  odorant-binding protein 2a isoform X2

  12. XM_063283185.1 → XP_063139255.1  odorant-binding protein 2a isoform X1

  13. XM_063283184.1 → XP_063139254.1  odorant-binding protein 2a isoform X1

  14. XM_063283182.1 → XP_063139252.1  odorant-binding protein 2a isoform X1

  15. XM_063283183.1 → XP_063139253.1  odorant-binding protein 2a isoform X1

RNA

  1. XR_010064574.1 RNA Sequence

  2. XR_010064573.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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