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Zfp213 zinc finger protein 213 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287094, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp213provided by RGD
Official Full Name
zinc finger protein 213provided by RGD
Primary source
RGD:1305919
See related
EnsemblRapid:ENSRNOG00000021872 AllianceGenome:RGD:1305919
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf213
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF213 (zinc finger protein 213). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 40.9), Kidney (RPKM 37.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp213 in Genome Data Viewer
Location:
10q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (13096995..13103918, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12592368..12599296, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (12885533..12892464, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene caspase 16 Neighboring gene transfer RNA arginine (anticodon CCU) 4 Neighboring gene transfer RNA arginine (anticodon CCG) 1 Neighboring gene uncharacterized LOC120095040 Neighboring gene zinc finger protein 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 213

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105764.1 → NP_001099234.1  zinc finger protein 213

    See identical proteins and their annotated locations for NP_001099234.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A6HCJ4, D4A1V0
    Related
    ENSRNOP00000038605.4, ENSRNOT00000030704.6
    Conserved Domains (6) summary
    smart00431
    Location:41 → 140
    SCAN; leucine rich region
    COG5048
    Location:245 → 381
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:249 → 269
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:331 → 353
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:41 → 124
    SCAN; SCAN domain
    pfam13465
    Location:261 → 286
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    13096995..13103918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039085343.2 → XP_038941271.1  zinc finger protein 213 isoform X5

    UniProtKB/TrEMBL
    A6HCJ6
    Conserved Domains (1) summary
    cl02605
    Location:41 → 140
    SCAN; SCAN oligomerization domain

  2. XM_006245862.5 → XP_006245924.1  zinc finger protein 213 isoform X1

    See identical proteins and their annotated locations for XP_006245924.1

    UniProtKB/TrEMBL
    A0A8I6ADN5
    Related
    ENSRNOP00000092440.1, ENSRNOT00000104194.2
    Conserved Domains (7) summary
    smart00431
    Location:41 → 140
    SCAN; leucine rich region
    cd07765
    Location:213 → 247
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:324 → 460
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328 → 348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:410 → 432
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:41 → 124
    SCAN; SCAN domain
    pfam13465
    Location:340 → 365
    zf-H2C2_2; Zinc-finger double domain

  3. XM_006245863.3 → XP_006245925.1  zinc finger protein 213 isoform X1

    See identical proteins and their annotated locations for XP_006245925.1

    UniProtKB/TrEMBL
    A0A8I6ADN5
    Conserved Domains (7) summary
    smart00431
    Location:41 → 140
    SCAN; leucine rich region
    cd07765
    Location:213 → 247
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:324 → 460
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328 → 348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:410 → 432
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:41 → 124
    SCAN; SCAN domain
    pfam13465
    Location:340 → 365
    zf-H2C2_2; Zinc-finger double domain

  4. XM_063268537.1 → XP_063124607.1  zinc finger protein 213 isoform X5

  5. XM_039085340.1 → XP_038941268.1  zinc finger protein 213 isoform X3

    UniProtKB/TrEMBL
    A6HCJ5
    Conserved Domains (3) summary
    cd07765
    Location:28 → 62
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:139 → 275
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:143 → 163
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_039085342.2 → XP_038941270.1  zinc finger protein 213 isoform X4

    UniProtKB/TrEMBL
    A6HCJ6
    Conserved Domains (1) summary
    cl02605
    Location:41 → 140
    SCAN; SCAN oligomerization domain

  7. XM_039085339.2 → XP_038941267.1  zinc finger protein 213 isoform X2

    Conserved Domains (2) summary
    cd07765
    Location:213 → 247
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    cl02605
    Location:41 → 140
    SCAN; SCAN oligomerization domain

  8. XM_063268535.1 → XP_063124605.1  zinc finger protein 213 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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