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Mrps34 mitochondrial ribosomal protein S34 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287126, updated on 2-Nov-2024

Summary

Official Symbol
Mrps34provided by RGD
Official Full Name
mitochondrial ribosomal protein S34provided by RGD
Primary source
RGD:1305623
See related
EnsemblRapid:ENSRNOG00000015300 AllianceGenome:RGD:1305623
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 32. Orthologous to human MRPS34 (mitochondrial ribosomal protein S34). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 177.6), Liver (RPKM 158.8) and 9 other tissues See more
Orthologs
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Genomic context

See Mrps34 in Genome Data Viewer
Location:
10q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (14420543..14421674)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (13916024..13917155)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (14257001..14258132)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor binding protein, acid labile subunit Neighboring gene NUBP iron-sulfur cluster assembly factor 2 Neighboring gene splA/ryanodine receptor domain and SOCS box containing 3 Neighboring gene essential meiotic structure-specific endonuclease subunit 2 Neighboring gene mitogen-activated protein kinase 8 interacting protein 3 Neighboring gene NME/NM23 nucleoside diphosphate kinase 3 Neighboring gene uncharacterized LOC134480762

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in mitochondrial translation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mitochondrial translation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
small ribosomal subunit protein mS34
Names
28S ribosomal protein S34, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105771.1NP_001099241.1  small ribosomal subunit protein mS34

    See identical proteins and their annotated locations for NP_001099241.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A6HCY4, D4ABM5
    Related
    ENSRNOP00000021075.5, ENSRNOT00000021075.7
    Conserved Domains (1) summary
    pfam16053
    Location:74187
    MRP-S34; Mitochondrial 28S ribosomal protein S34

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    14420543..14421674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)