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Hid1 HID1 domain containing [ Rattus norvegicus (Norway rat) ]

Gene ID: 287822, updated on 10-Jul-2024

Summary

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Official Symbol
Hid1provided by RGD
Official Full Name
HID1 domain containingprovided by RGD
Primary source
RGD:1311422
See related
EnsemblRapid:ENSRNOG00000003464 AllianceGenome:RGD:1311422
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311422
Summary
Predicted to be located in Golgi apparatus; cytoplasmic microtubule; and cytosol. Predicted to be extrinsic component of Golgi membrane. Predicted to be active in Golgi medial cisterna; Golgi trans cisterna; and membrane. Orthologous to human HID1 (HID1 domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 154.5), Lung (RPKM 88.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Hid1 in Genome Data Viewer
Location:
10q32.1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (101088526..101109011, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (100589555..100610050, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (103899160..103919649, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene otopetrin 2 Neighboring gene otopetrin 3 Neighboring gene uncharacterized LOC134480902 Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene mitochondrial ribosomal protein L58

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. HID-1 is a peripheral membrane protein primarily associated with the medial- and trans- Golgi apparatus. Wang L, et al. Protein Cell, 2011 Jan. PMID 21337012, Free PMC Article
  2. MTR120/KIAA1383, a novel microtubule-associated protein, promotes microtubule stability and ensures cytokinesis. Fong KW, et al. J Cell Sci, 2013 Feb 1. PMID 23264731, Free PMC Article
  3. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
is_active_in Golgi medial cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi medial cisterna ISO
Inferred from Sequence Orthology
more info
  
is_active_in Golgi trans cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi trans cisterna ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic side of Golgi membrane ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein HID1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304290.1 → NP_001291219.1  protein HID1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    D4A0C3
    Conserved Domains (1) summary
    pfam12722
    Location:1 → 784
    Hid1; High-temperature-induced dauer-formation protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    101088526..101109011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268780.1 → XP_063124850.1  protein HID1 isoform X3

  2. XM_039085671.2 → XP_038941599.1  protein HID1 isoform X2

    Conserved Domains (1) summary
    pfam12722
    Location:1 → 746
    Hid1; High-temperature-induced dauer-formation protein

  3. XM_006247774.5 → XP_006247836.1  protein HID1 isoform X1

    See identical proteins and their annotated locations for XP_006247836.1

    Related
    ENSRNOP00000004718.6, ENSRNOT00000004718.8
    Conserved Domains (1) summary
    pfam12722
    Location:1 → 785
    Hid1; High-temperature-induced dauer-formation protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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