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Abcf3 ATP binding cassette subfamily F member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287982, updated on 2-Nov-2024

Summary

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Official Symbol
Abcf3provided by RGD
Official Full Name
ATP binding cassette subfamily F member 3provided by RGD
Primary source
RGD:1310468
See related
EnsemblRapid:ENSRNOG00000001710 AllianceGenome:RGD:1310468
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable ATP binding activity. Predicted to be involved in defense response to virus. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 224.1), Heart (RPKM 222.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Abcf3 in Genome Data Viewer
Location:
11q23
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (93844863..93856595, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (80340476..80352211, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (84026206..84037938, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ALG3, alpha-1,3- mannosyltransferase Neighboring gene microRNA 1224 Neighboring gene von Willebrand factor A domain containing 5B2 Neighboring gene uncharacterized LOC102551647 Neighboring gene uncharacterized LOC102551795 Neighboring gene adaptor related protein complex 2 subunit mu 1 Neighboring gene dishevelled segment polarity protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. E-cadherin interactome complexity and robustness resolved by quantitative proteomics. Guo Z, et al. Sci Signal, 2014 Dec 2. PMID 25468996, Free PMC Article
  2. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-binding cassette sub-family F member 3
Names
ATP-binding cassette, sub-family F (GCN20), member 3
ATP-binding cassette, subfamily F (GCN20), member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011896.1 → NP_001011896.1  ATP-binding cassette sub-family F member 3

    See identical proteins and their annotated locations for NP_001011896.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082042
    UniProtKB/Swiss-Prot
    Q66H39
    UniProtKB/TrEMBL
    A6JSA8
    Related
    ENSRNOP00000109432.1, ENSRNOT00000133139.1
    Conserved Domains (4) summary
    cd03221
    Location:178 → 401
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    PLN03073
    Location:6 → 700
    PLN03073; ABC transporter F family; Provisional
    pfam12848
    Location:395 → 477
    ABC_tran_Xtn; ABC transporter
    cl21455
    Location:266 → 363
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    93844863..93856595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270329.1 → XP_063126399.1  ATP-binding cassette sub-family F member 3 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66H39.1 GenPept UniProtKB/Swiss-Prot:Q66H39

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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