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Cmss1 cms1 ribosomal small subunit homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 288176, updated on 2-Nov-2024

Summary

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Official Symbol
Cmss1provided by RGD
Official Full Name
cms1 ribosomal small subunit homologprovided by RGD
Primary source
RGD:1309437
See related
EnsemblRapid:ENSRNOG00000027888 AllianceGenome:RGD:1309437
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309437
Summary
Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 84.2), Thymus (RPKM 65.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cmss1 in Genome Data Viewer
Location:
11q12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (56403620..56701751)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (42934390..43232624)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (45031627..45330481)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene collagen type VIII alpha 1 chain Neighboring gene filamin A interacting protein 1-like Neighboring gene uncharacterized LOC134481062 Neighboring gene uncharacterized LOC134481063 Neighboring gene transmembrane protein 30C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC108788

General protein information

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Preferred Names
protein CMSS1
Names
uncharacterized protein C3orf26 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013866.1 → NP_001013888.1  protein CMSS1

    See identical proteins and their annotated locations for NP_001013888.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089826
    UniProtKB/Swiss-Prot
    Q5FVR6
    UniProtKB/TrEMBL
    A0A0H2UHT9, A6IQM4
    Related
    ENSRNOP00000094701.1, ENSRNOT00000106111.2
    Conserved Domains (1) summary
    cl21455
    Location:105 → 258
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    56403620..56701751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270410.1 → XP_063126480.1  protein CMSS1 isoform X1

    Related
    ENSRNOP00000031451.6, ENSRNOT00000031464.6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5FVR6.1 GenPept UniProtKB/Swiss-Prot:Q5FVR6

Gene LinkOut

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