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Kiaa1671 KIAA1671 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 288744, updated on 2-Nov-2024

Summary

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Official Symbol
Kiaa1671provided by RGD
Official Full Name
KIAA1671 homologprovided by RGD
Primary source
RGD:1306556
See related
EnsemblRapid:ENSRNOG00000052424 AllianceGenome:RGD:1306556
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306556; RGD1560125
Summary
Orthologous to human KIAA1671 (KIAA1671). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 65.1), Adrenal (RPKM 57.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Kiaa1671 in Genome Data Viewer
Location:
12q16
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (49069929..49212604)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (43409479..43552152)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (49418026..49561038)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352470 Neighboring gene uncharacterized LOC134481210 Neighboring gene LHFPL tetraspan subfamily member 7 Neighboring gene uncharacterized LOC102552141 Neighboring gene crystallin, beta B3 Neighboring gene crystallin, beta B2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein KIAA1671 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402472.1 → NP_001389401.1  uncharacterized protein KIAA1671 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A0A0G2JZ88
    Related
    ENSRNOP00000070952.1, ENSRNOT00000082998.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    49069929..49212604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598547.3 → XP_017454036.1  uncharacterized protein KIAA1671 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2JZ88
    Conserved Domains (2) summary
    PTZ00449
    Location:166 → 440
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam15327
    Location:1596 → 1761
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  2. XM_039090200.2 → XP_038946128.1  uncharacterized protein KIAA1671 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2JZ88
    Conserved Domains (2) summary
    PTZ00449
    Location:166 → 440
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam15327
    Location:1596 → 1761
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  3. XM_063271226.1 → XP_063127296.1  uncharacterized protein KIAA1671 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2JZ88

  4. XM_006249576.4 → XP_006249638.1  uncharacterized protein KIAA1671 homolog isoform X3

    See identical proteins and their annotated locations for XP_006249638.1

    UniProtKB/TrEMBL
    A0A8I6AJY8
    Related
    ENSRNOP00000094014.1, ENSRNOT00000095507.2
    Conserved Domains (1) summary
    pfam15327
    Location:134 → 300
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  5. XM_006249575.5 → XP_006249637.1  uncharacterized protein KIAA1671 homolog isoform X2

    See identical proteins and their annotated locations for XP_006249637.1

    UniProtKB/TrEMBL
    A0A8I6AS67
    Related
    ENSRNOP00000097170.1, ENSRNOT00000119382.2
    Conserved Domains (1) summary
    pfam15327
    Location:212 → 377
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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