Fbxw9 F-box and WD repeat domain containing 9 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Fbxw9provided by RGD
Official Full Name: F-box and WD repeat domain containing 9provided by RGD
Primary source: RGD:1307002
See related: EnsemblRapid:ENSRNOG00000004212 AllianceGenome:RGD:1307002
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human FBXW9 (F-box and WD repeat domain containing 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Testes (RPKM 67.5), Adrenal (RPKM 54.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q11

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (39995408..40002312, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (23090534..23097439, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (26173771..26180675)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH131128 (e-PCR)
- UniSTS:214411

RH132761 (e-PCR)
- UniSTS:216044

General protein information

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Preferred Names: F-box/WD repeat-containing protein 9

Names: F-box and WD-40 domain protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081634.1 → NP_001075103.1 F-box/WD repeat-containing protein 9

Status: VALIDATED

Source sequence(s)

JAXUCZ010000019

UniProtKB/TrEMBL

A6IY33, F1MAM1

Related

ENSRNOP00000005581.5, ENSRNOT00000005581.7

Conserved Domains (3) summary

COG2319
Location:167 → 456

WD40; WD40 repeat [General function prediction only]

sd00039
Location:177 → 224

7WD40; WD40 repeat [structural motif]

cl02567
Location:171 → 413

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...