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C13h2orf76 similar to chromosome 2 open reading frame 76 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288978, updated on 2-Nov-2024

Summary

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Official Symbol
C13h2orf76provided by RGD
Official Full Name
similar to chromosome 2 open reading frame 76provided by RGD
Primary source
RGD:1594584
See related
EnsemblRapid:ENSRNOG00000045570 AllianceGenome:RGD:1594584
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C2orf76 (chromosome 2 open reading frame 76). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 62.5), Kidney (RPKM 41.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C13h2orf76 in Genome Data Viewer
Location:
13q11
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (33801523..33889430)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (31249733..31335367)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (36155956..36244256)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481481 Neighboring gene secretin receptor Neighboring gene transmembrane protein 37 Neighboring gene diazepam binding inhibitor Neighboring gene STEAP3 metalloreductase Neighboring gene complement C1q like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
UPF0538 protein C2orf76 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134500.2 → NP_001127972.1  UPF0538 protein C2orf76 homolog isoform 2

    See identical proteins and their annotated locations for NP_001127972.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013
    UniProtKB/TrEMBL
    A6K7Z3, M0R9J6
    Related
    ENSRNOP00000066166.2, ENSRNOT00000071437.3
    Conserved Domains (1) summary
    pfam10209
    Location:8 → 126
    DUF2340; Uncharacterized conserved protein (DUF2340)

  2. NM_001401154.1 → NP_001388083.1  UPF0538 protein C2orf76 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013

  3. NM_001401155.1 → NP_001388084.1  UPF0538 protein C2orf76 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013

  4. NM_001401156.1 → NP_001388085.1  UPF0538 protein C2orf76 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013
    Related
    ENSRNOP00000112765.1, ENSRNOT00000164546.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    33801523..33889430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008769433.3 → XP_008767655.2  UPF0538 protein C2orf76 homolog isoform X1

    Related
    ENSRNOP00000101956.1, ENSRNOT00000154454.1

  2. XM_039090418.2 → XP_038946346.1  UPF0538 protein C2orf76 homolog isoform X2

    Conserved Domains (1) summary
    pfam10209
    Location:12 → 94
    DUF2340; Uncharacterized conserved protein (DUF2340)

RNA

  1. XR_010056902.1 RNA Sequence

  2. XR_010056903.1 RNA Sequence

  3. XR_010056904.1 RNA Sequence

  4. XR_005492206.2 RNA Sequence

  5. XR_010056905.1 RNA Sequence

  6. XR_010056906.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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