Slc35f5 solute carrier family 35, member F5 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slc35f5provided by RGD
Official Full Name: solute carrier family 35, member F5provided by RGD
Primary source: RGD:1308125
See related: EnsemblRapid:ENSRNOG00000003403 AllianceGenome:RGD:1308125
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be located in membrane. Orthologous to human SLC35F5 (solute carrier family 35 member F5). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 358.7), Liver (RPKM 107.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 13q12

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	13	NC_086031.1 (39544253..39581210)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	13	NC_051348.1 (36992118..37028549)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	13	NC_005112.4 (41882733..41922358)

Chromosome 13 - NC_086031.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Slc35f5 (e-PCR), detects polymorphism
- UniSTS:547098

AU046910 (e-PCR)
- UniSTS:115921

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 35 member F5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105950.1 → NP_001099420.1 solute carrier family 35 member F5

See identical proteins and their annotated locations for NP_001099420.1

Status: PROVISIONAL

Source sequence(s)

CH474028

UniProtKB/TrEMBL

A0A8I6G454, A6K821, D3ZT80

Related

ENSRNOP00000004581.5, ENSRNOT00000004581.7

Conserved Domains (1) summary

COG0697
Location:246 → 471

RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086031.1 Reference GRCr8

Range

39544253..39581210

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063272063.1 → XP_063128133.1 solute carrier family 35 member F5 isoform X1

Related

ENSRNOP00000102521.1, ENSRNOT00000142436.1
XM_006249671.5 → XP_006249733.1 solute carrier family 35 member F5 isoform X2

UniProtKB/TrEMBL

A0A8I6G3G3

Related

ENSRNOP00000079551.2, ENSRNOT00000094536.2

Conserved Domains (2) summary

COG0697
Location:268 → 493

RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

pfam00892
Location:350 → 493

EamA; EamA-like transporter family
XM_017598688.3 → XP_017454177.1 solute carrier family 35 member F5 isoform X3

UniProtKB/TrEMBL

A0A8I6G3G3
XM_039090423.2 → XP_038946351.1 solute carrier family 35 member F5 isoform X4

UniProtKB/TrEMBL

A0A8I6ANK8, A0A8I6G454

Related

ENSRNOP00000090608.1, ENSRNOT00000118661.2

Conserved Domains (1) summary

COG0697
Location:225 → 450

RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]