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C13h1orf21 similar to human chromosome 1 open reading frame 21 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289084, updated on 17-Aug-2024

Summary

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Official Symbol
C13h1orf21provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 21provided by RGD
Primary source
RGD:1309104
See related
EnsemblRapid:ENSRNOG00000028236 AllianceGenome:RGD:1309104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309104
Summary
Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 167.8), Muscle (RPKM 135.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
13q21
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (66540245..66749631, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (63982587..64199676, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (69265649..69434447, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene ER degradation enhancing alpha-mannosidase like protein 3 Neighboring gene ribosomal protein L23A like 9 Neighboring gene uncharacterized LOC120096277 Neighboring gene uncharacterized LOC108352552 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120096278

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein C1orf21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105959.1 → NP_001099429.1  uncharacterized protein C1orf21 homolog

    See identical proteins and their annotated locations for NP_001099429.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473958
    UniProtKB/TrEMBL
    A0A8I6A0H8, A6ICT2, D3ZU88
    Related
    ENSRNOP00000056553.2, ENSRNOT00000059807.5
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    66540245..66749631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090444.2 → XP_038946372.1  uncharacterized protein C1orf21 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6A0H8, A6ICT2, D3ZU88
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)

  2. XM_063272097.1 → XP_063128167.1  uncharacterized protein C1orf21 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6A0H8, A6ICT2, D3ZU88
Nucleotide Protein Strain
Heading Accession and Version

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