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Cnih1 cornichon family member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289994, updated on 2-Nov-2024

Summary

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Official Symbol
Cnih1provided by RGD
Official Full Name
cornichon family member 1provided by RGD
Primary source
RGD:1312030
See related
EnsemblRapid:ENSRNOG00000009811 AllianceGenome:RGD:1312030
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cnih
Summary
Predicted to enable signaling receptor binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Orthologous to human CNIH1 (cornichon family member 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 227.9), Heart (RPKM 222.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cnih1 in Genome Data Viewer
Location:
15p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (22517755..22529651, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (20037885..20049857, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (23568568..23580342, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481956 Neighboring gene cyclin-dependent kinase inhibitor 3 Neighboring gene glia maturation factor, beta Neighboring gene cell growth regulator with ring finger domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein cornichon homolog 1
Names
cornichon family AMPA receptor auxiliary protein 1
cornichon homolog
protein cornichon homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106029.2 → NP_001099499.1  protein cornichon homolog 1

    See identical proteins and their annotated locations for NP_001099499.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158747
    UniProtKB/TrEMBL
    B0BNA6
    Related
    ENSRNOP00000102788.1, ENSRNOT00000160710.1
    Conserved Domains (1) summary
    pfam03311
    Location:7 → 135
    Cornichon; Cornichon protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    22517755..22529651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093098.2 → XP_038949026.1  protein cornichon homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K112
    Related
    ENSRNOP00000071661.1, ENSRNOT00000085767.3
    Conserved Domains (1) summary
    pfam03311
    Location:7 → 151
    Cornichon; Cornichon protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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