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FOXN3-AS2 FOXN3 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 29018, updated on 10-Oct-2023

Summary

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Official Symbol
FOXN3-AS2provided by HGNC
Official Full Name
FOXN3 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:30119
See related
Ensembl:ENSG00000259073 AllianceGenome:HGNC:30119
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO1768
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Genomic context

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Location:
14q32.11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (89576216..89577477)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (83799894..83801154)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (90042560..90043821)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene forkhead box N3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:89883272-89883804 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:89891172-89891786 Neighboring gene uncharacterized LOC107984635 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:89894848-89896047 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:89898457-89899010 Neighboring gene FOXN3 antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:89906553-89907136 Neighboring gene Sharpr-MPRA regulatory region 349 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:89907723-89908306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:89919266-89920166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:89929363-89929862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:89932229-89933148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:89933149-89934068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8868 Neighboring gene H3K27ac hESC enhancers GRCh37_chr14:90084905-90085406 and GRCh37_chr14:90085407-90085906 Neighboring gene uncharacterized LOC105370617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90091889-90092462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8869 Neighboring gene uncharacterized LOC105370616 Neighboring gene RN7SK pseudogene 107

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The DNA sequence and analysis of human chromosome 14. Heilig R, et al. Nature, 2003 Feb 6. PMID 12508121
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTD-2303B20.1
  • FOXN3 antisense RNA 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024620.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL163032
    Related
    ENST00000554071.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    89576216..89577477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    83799894..83801154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_014099.1: Suppressed sequence

    Description
    NM_014099.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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