Trappc2l trafficking protein particle complex subunit 2L [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Trappc2lprovided by RGD
Official Full Name: trafficking protein particle complex subunit 2Lprovided by RGD
Primary source: RGD:1304906
See related: EnsemblRapid:ENSRNOG00000074962 AllianceGenome:RGD:1304906
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1304906
Summary: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in cytosol and intracellular membrane-bounded organelle. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRAPPC2L (trafficking protein particle complex subunit 2L). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 203.7), Heart (RPKM 172.0) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (67570954..67574722)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (50662507..50666193)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (55423350..55428551)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
part_of TRAPP complex	IBA Inferred from Biological aspect of Ancestor more info
part_of TRAPP complex	IEA Inferred from Electronic Annotation more info
part_of TRAPP complex	ISO Inferred from Sequence Orthology more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in intracellular membrane-bounded organelle	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: trafficking protein particle complex subunit 2-like protein

Names: trafficking protein particle complex 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106193.1 → NP_001099663.1 trafficking protein particle complex subunit 2-like protein

See identical proteins and their annotated locations for NP_001099663.1

Status: PROVISIONAL

Source sequence(s)

CH473972

UniProtKB/Swiss-Prot

B2RYU6

UniProtKB/TrEMBL

A0A8I5ZSU0

Related

ENSRNOP00000100655.1, ENSRNOT00000172719.1

Conserved Domains (1) summary

cd14854
Location:3 → 135

TRAPPC2L; Trafficking protein particle complex subunit 2-like

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086037.1 Reference GRCr8

Range

67570954..67574722

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063277949.1 → XP_063134019.1 trafficking protein particle complex subunit 2-like protein isoform X1
XM_063277950.1 → XP_063134020.1 trafficking protein particle complex subunit 2-like protein isoform X2