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Lrrc51 leucine rich repeat containing 51 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293156, updated on 13-Jul-2024

Summary

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Official Symbol
Lrrc51provided by RGD
Official Full Name
leucine rich repeat containing 51provided by RGD
Primary source
RGD:1565856
See related
EnsemblRapid:ENSRNOG00000020124 AllianceGenome:RGD:1565856
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565856
Summary
Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 635.9) and Lung (RPKM 35.5) See more
Orthologs
human mouse all
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Genomic context

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See Lrrc51 in Genome Data Viewer
Location:
1q32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (165690617..165709837, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (156278617..156297838, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (166997973..167017221, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene leucine rich transmembrane and O-methyltransferase domain containing Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 Neighboring gene nuclear mitotic apparatus protein 1 Neighboring gene uncharacterized LOC134483764 Neighboring gene interleukin 18 binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Mutations of LRTOMT, a fusion gene with alternative reading frames, cause nonsyndromic deafness in humans. Ahmed ZM, et al. Nat Genet, 2008 Nov. PMID 18953341, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 51
Names
protein LRTOMT1
NP_001099754.1
XP_006229932.1
XP_006229933.1
XP_006229934.1
XP_006229935.1
XP_006229936.1
XP_006229937.1
XP_063141282.1
XP_063141284.1
XP_063141288.1
XP_063141298.1
XP_063141303.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106284.1 → NP_001099754.1  leucine-rich repeat-containing protein 51

    See identical proteins and their annotated locations for NP_001099754.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473956
    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    165690617..165709837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006229873.5 → XP_006229935.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229935.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  2. XM_006229874.5 → XP_006229936.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229936.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  3. XM_063285214.1 → XP_063141284.1  leucine-rich repeat-containing protein 51 isoform X1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715

  4. XM_063285212.1 → XP_063141282.1  leucine-rich repeat-containing protein 51 isoform X1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715

  5. XM_063285218.1 → XP_063141288.1  leucine-rich repeat-containing protein 51 isoform X1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715

  6. XM_006229872.5 → XP_006229934.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229934.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  7. XM_063285228.1 → XP_063141298.1  leucine-rich repeat-containing protein 51 isoform X1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715

  8. XM_006229871.5 → XP_006229933.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229933.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  9. XM_006229875.5 → XP_006229937.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229937.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  10. XM_006229870.5 → XP_006229932.1  leucine-rich repeat-containing protein 51 isoform X1

    See identical proteins and their annotated locations for XP_006229932.1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Related
    ENSRNOP00000027261.4, ENSRNOT00000027261.7
    Conserved Domains (2) summary
    sd00033
    Location:52 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:89 → 173
    LRR_9; Leucine-rich repeat

  11. XM_063285233.1 → XP_063141303.1  leucine-rich repeat-containing protein 51 isoform X1

    UniProtKB/Swiss-Prot
    B6CZ61
    UniProtKB/TrEMBL
    A0A8I6A715
    Related
    ENSRNOP00000084027.1, ENSRNOT00000095386.2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B6CZ61.1 GenPept UniProtKB/Swiss-Prot:B6CZ61

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