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Bcl7c BAF chromatin remodeling complex subunit BCL7C [ Rattus norvegicus (Norway rat) ]

Gene ID: 293514, updated on 2-Nov-2024

Summary

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Official Symbol
Bcl7cprovided by RGD
Official Full Name
BAF chromatin remodeling complex subunit BCL7Cprovided by RGD
Primary source
RGD:1308439
See related
EnsemblRapid:ENSRNOG00000018916 AllianceGenome:RGD:1308439
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be part of SWI/SNF complex. Orthologous to human BCL7C (BAF chromatin remodeling complex subunit BCL7C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 199.6), Testes (RPKM 174.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Bcl7c in Genome Data Viewer
Location:
1q37
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (191703432..191754751, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (182277163..182324274, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199112192..199159125, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 119 Neighboring gene ring finger protein 40 Neighboring gene zinc finger protein 629 Neighboring gene 5S ribosomal RNA Neighboring gene microRNA 762 Neighboring gene cardiotrophin 1 Neighboring gene cardiotrophin 2 Neighboring gene uncharacterized LOC134483922 Neighboring gene F-box and leucine-rich repeat protein 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
part_of SWI/SNF complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
B-cell CLL/lymphoma 7 protein family member C
Names
B-cell CLL/lymphoma 7C
BCL tumor suppressor 7C
BCL7C, BAF complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106298.1 → NP_001099768.1  B-cell CLL/lymphoma 7 protein family member C

    See identical proteins and their annotated locations for NP_001099768.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473956
    UniProtKB/TrEMBL
    A6I9T2
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    191703432..191754751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588995.3 → XP_017444484.1  B-cell CLL/lymphoma 7 protein family member C isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZYK9
    Related
    ENSRNOP00000103249.1, ENSRNOT00000137003.1
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region

  2. XM_017588996.3 → XP_017444485.1  B-cell CLL/lymphoma 7 protein family member C isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZYK9, A0A8I6A5R4
    Related
    ENSRNOP00000086304.2, ENSRNOT00000114284.2
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region

  3. XM_006230256.5 → XP_006230318.1  B-cell CLL/lymphoma 7 protein family member C isoform X3

    UniProtKB/TrEMBL
    D3ZUL4
    Related
    ENSRNOP00000025618.5, ENSRNOT00000025618.7
    Conserved Domains (1) summary
    pfam04714
    Location:4 → 50
    BCL_N; BCL7, N-terminal conserver region
Nucleotide Protein Strain
Heading Accession and Version

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