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Ifitm10 interferon induced transmembrane protein 10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293632, updated on 27-Jul-2024

Summary

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Official Symbol
Ifitm10provided by RGD
Official Full Name
interferon induced transmembrane protein 10provided by RGD
Primary source
RGD:1563319
See related
AllianceGenome:RGD:1563319
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563319
Summary
Predicted to be integral component of membrane. Orthologous to human IFITM10 (interferon induced transmembrane protein 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 63.9), Muscle (RPKM 43.9) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ifitm10 in Genome Data Viewer
Location:
1q41
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (206936979..206954594, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (197507501..197524180, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (215521604..215538283, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene keratin associated protein 5-5 like 2 Neighboring gene keratin associated protein 5-8 Neighboring gene troponin I2, fast skeletal type Neighboring gene uncharacterized LOC120097365 Neighboring gene cathepsin D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Evolution of vertebrate interferon inducible transmembrane proteins. Hickford D, et al. BMC Genomics, 2012 Apr 26. PMID 22537233, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
interferon induced transmembrane protein 10; interferon-induced transmembrane protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432149.1 → NP_001419078.1  interferon induced transmembrane protein 10 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  2. NM_001432151.1 → NP_001419080.1  interferon induced transmembrane protein 10 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  3. NM_001432152.1 → NP_001419081.1  interferon induced transmembrane protein 10 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RNA

  1. NR_197269.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    206936979..206954594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279723.1 → XP_063135793.1  interferon-induced transmembrane protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JYW7

  2. XM_063279728.1 → XP_063135798.1  interferon-induced transmembrane protein 10 isoform X3

  3. XM_063279722.1 → XP_063135792.1  interferon-induced transmembrane protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JYW7

  4. XM_063279725.1 → XP_063135795.1  interferon-induced transmembrane protein 10 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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