Trpt1 tRNA phosphotransferase 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Trpt1provided by RGD
Official Full Name: tRNA phosphotransferase 1provided by RGD
Primary source: RGD:1310831
See related: EnsemblRapid:ENSRNOG00000023023 AllianceGenome:RGD:1310831
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tpt1h
Summary: Predicted to enable tRNA 2'-phosphotransferase activity. Predicted to be involved in tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to act upstream of or within regulation of protein kinase activity. Orthologous to human TRPT1 (tRNA phosphotransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Thymus (RPKM 132.8), Spleen (RPKM 114.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q43

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (213615503..213620502)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (204186295..204191294)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (222250995..222255994)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

RH127407 (e-PCR)
- UniSTS:210717

RH130711 (e-PCR)
- UniSTS:213995

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables tRNA 2'-phosphotransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables tRNA 2'-phosphotransferase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of protein kinase activity	ISO Inferred from Sequence Orthology more info
involved_in tRNA splicing, via endonucleolytic cleavage and ligation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tRNA splicing, via endonucleolytic cleavage and ligation	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: tRNA 2'-phosphotransferase 1

Names: tRNA splicing 2' phosphotransferase 1 homolog

NP_001099801.1

EC 2.7.1.160

XP_006230823.1

EC 2.7.1.160

XP_063142955.1

EC 2.7.1.160

XP_063142957.1

EC 2.7.1.160

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.