U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Xlr4a X-linked lymphocyte-regulated 4A [ Rattus norvegicus (Norway rat) ]

Gene ID: 293841, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Xlr4aprovided by RGD
Official Full Name
X-linked lymphocyte-regulated 4Aprovided by RGD
Primary source
RGD:1565442
See related
EnsemblRapid:ENSRNOG00000055822 AllianceGenome:RGD:1565442
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565442
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Orthologous to human FAM9C (family with sequence similarity 9 member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 13.2), Thymus (RPKM 1.1) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
Xq37
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (155958900..155967302, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (150916647..150925201, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (153072965..153081324, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene PNMA family member 5 Neighboring gene PNMA family member 3 Neighboring gene coagulation factor VIII-associated 1 Neighboring gene X-linked lymphocyte-regulated protein 3A-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
X-linked lymphocyte-regulated 4A; X-linked lymphocyte-regulated protein 3A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432858.1 → NP_001419787.1  X-linked lymphocyte-regulated 4A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021

  2. NM_001432859.1 → NP_001419788.1  X-linked lymphocyte-regulated 4A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021

  3. NM_001432861.1 → NP_001419790.1  X-linked lymphocyte-regulated 4A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    155958900..155967302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006229528.5 → XP_006229590.1  X-linked lymphocyte-regulated protein 3A isoform X1

    See identical proteins and their annotated locations for XP_006229590.1

    UniProtKB/TrEMBL
    A6KSZ1, D4A7L7
    Conserved Domains (1) summary
    pfam04803
    Location:63 → 177
    Cor1; Cor1/Xlr/Xmr conserved region

  2. XM_219738.10 → XP_219738.6  X-linked lymphocyte-regulated protein 3A isoform X2

    UniProtKB/TrEMBL
    D4A7L7
    Conserved Domains (1) summary
    pfam04803
    Location:76 → 190
    Cor1; Cor1/Xlr/Xmr conserved region

  3. XM_006229524.5 → XP_006229586.1  X-linked lymphocyte-regulated protein 3A isoform X1

    UniProtKB/TrEMBL
    A6KSZ1, D4A7L7
    Related
    ENSRNOP00000069444.3, ENSRNOT00000091365.3
    Conserved Domains (1) summary
    pfam04803
    Location:63 → 177
    Cor1; Cor1/Xlr/Xmr conserved region

  4. XM_006229523.5 → XP_006229585.1  X-linked lymphocyte-regulated protein 3A isoform X1

    UniProtKB/TrEMBL
    A6KSZ1, D4A7L7
    Conserved Domains (1) summary
    pfam04803
    Location:63 → 177
    Cor1; Cor1/Xlr/Xmr conserved region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.