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Pum3l1 pumilio RNA-binding family member 3 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294066, updated on 2-Nov-2024

Summary

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Official Symbol
Pum3l1provided by RGD
Official Full Name
pumilio RNA-binding family member 3 like 1provided by RGD
Primary source
RGD:1308750
See related
EnsemblRapid:ENSRNOG00000048356 AllianceGenome:RGD:1308750
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308750
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of translation. Predicted to be active in nucleolus. Orthologous to human PUM3 (pumilio RNA binding family member 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Pum3l1 in Genome Data Viewer
Location:
Xq37
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (154615637..154617736, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (149570869..149572962, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (70068390..70070486)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene vacuolar ATPase assembly factor VMA21 Neighboring gene ubiquitin specific peptidase 12 like 1 Neighboring gene PAS domain containing repressor 1 Neighboring gene proline rich and Gla domain 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pumilio homolog 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    154615637..154617736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100243.2 → XP_038956171.1  pumilio homolog 3-like

    UniProtKB/TrEMBL
    A0A8L2QIX0, M0R548
    Related
    ENSRNOP00000064504.1, ENSRNOT00000073254.4
    Conserved Domains (2) summary
    pfam08144
    Location:433 → 570
    CPL; CPL (NUC119) domain
    cl29546
    Location:181 → 441
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein Strain
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