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Zbtb9 zinc finger and BTB domain containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294289, updated on 2-Nov-2024

Summary

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Official Symbol
Zbtb9provided by RGD
Official Full Name
zinc finger and BTB domain containing 9provided by RGD
Primary source
RGD:1303050
See related
EnsemblRapid:ENSRNOG00000026799 AllianceGenome:RGD:1303050
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
3930402F13Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZBTB9 (zinc finger and BTB domain containing 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 48.6), Spleen (RPKM 40.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zbtb9 in Genome Data Viewer
Location:
20p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (5059296..5069422)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (5057433..5060459)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (5566517..5569535)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene uncharacterized LOC120098811 Neighboring gene BCL2-antagonist/killer 1 Neighboring gene gametogenetin binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The novel testicular enrichment protein Cfap58 is required for Notch-associated ciliogenesis. Li ZZ, et al. Biosci Rep, 2020 Jan 31. PMID 31904090, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213564.4 → NP_998729.1  zinc finger and BTB domain-containing protein 9

    See identical proteins and their annotated locations for NP_998729.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    A0A0U1RRY9, Q6MGD2
    Related
    ENSRNOP00000000574.4, ENSRNOT00000000574.9
    Conserved Domains (3) summary
    sd00017
    Location:380 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:30 → 140
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:405 → 425
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    5059296..5069422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601590.3 → XP_017457079.1  zinc finger and BTB domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0U1RRY9, Q6MGD2
    Conserved Domains (3) summary
    sd00017
    Location:380 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:30 → 140
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:405 → 425
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_039098512.2 → XP_038954440.1  zinc finger and BTB domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0U1RRY9, Q6MGD2
    Conserved Domains (3) summary
    sd00017
    Location:380 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:30 → 140
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:405 → 425
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_006256122.4 → XP_006256184.1  zinc finger and BTB domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006256184.1

    UniProtKB/TrEMBL
    A0A0U1RRY9, Q6MGD2
    Related
    ENSRNOP00000088894.1, ENSRNOT00000115758.3
    Conserved Domains (3) summary
    sd00017
    Location:380 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:30 → 140
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:405 → 425
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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