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Gatd3a glutamine amidotransferase class 1 domain containing 3A [ Rattus norvegicus (Norway rat) ]

Gene ID: 294326, updated on 2-Nov-2024

Summary

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Official Symbol
Gatd3aprovided by RGD
Official Full Name
glutamine amidotransferase class 1 domain containing 3Aprovided by RGD
Primary source
RGD:1303003
See related
EnsemblRapid:ENSRNOG00000001211 AllianceGenome:RGD:1303003
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
ES1; C21orf33; RGD1303003
Summary
Predicted to be active in mitochondrion. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 1682.4), Muscle (RPKM 973.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Gatd3a in Genome Data Viewer
Location:
20p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (10514459..10522556)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (10514793..10522894)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (11244353..11252450)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene PWP2, small subunit processome component Neighboring gene uncharacterized LOC134483782 Neighboring gene inducible T-cell co-stimulator ligand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A two-dimensional electrophoresis database of rat heart proteins. Li XP, et al. Electrophoresis, 1999 Apr-May. PMID 10344264
  2. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  3. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
  4. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC94888

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
ES1 protein homolog, mitochondrial
Names
glutamine amidotransferase like class 1 domain containing 3A
homolog of zebrafish ES1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004225.1 → NP_001004225.1  ES1 protein homolog, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001004225.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079380
    UniProtKB/Swiss-Prot
    P56571, Q68FS5
    UniProtKB/TrEMBL
    A6JK42
    Related
    ENSRNOP00000001609.5, ENSRNOT00000001609.6
    Conserved Domains (1) summary
    cd03133
    Location:43 → 264
    GATase1_ES1; Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    10514459..10522556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P56571.2 GenPept UniProtKB/Swiss-Prot:P56571

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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