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Fam13c family with sequence similarity 13, member C [ Rattus norvegicus (Norway rat) ]

Gene ID: 294565, updated on 17-Aug-2024

Summary

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Official Symbol
Fam13cprovided by RGD
Official Full Name
family with sequence similarity 13, member Cprovided by RGD
Primary source
RGD:1310149
See related
EnsemblRapid:ENSRNOG00000000275 AllianceGenome:RGD:1310149
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam13c1
Summary
Orthologous to human FAM13C (family with sequence similarity 13 member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 36.1), Brain (RPKM 35.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
20p11
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (18064706..18186888, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (18065625..18187792, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (19358869..19470212, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS19-like Neighboring gene uncharacterized LOC120098901 Neighboring gene uncharacterized LOC134483897 Neighboring gene uncharacterized LOC120098903 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein-like Neighboring gene uncharacterized LOC120098904 Neighboring gene uncharacterized LOC120098902 Neighboring gene uncharacterized LOC120098867 Neighboring gene uncharacterized LOC102549211 Neighboring gene uncharacterized LOC134483898

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein FAM13C
Names
family with sequence similarity 13, member C1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399503.1 → NP_001386432.1  protein FAM13C

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    F1LUC1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    18064706..18186888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099240.1 → XP_038955168.1  protein FAM13C isoform X5

    UniProtKB/TrEMBL
    A0A8I6AS96, F1LUC1
    Related
    ENSRNOP00000096331.1, ENSRNOT00000118972.2

  2. XM_039099238.2 → XP_038955166.1  protein FAM13C isoform X4

    UniProtKB/TrEMBL
    F1LUC1
    Related
    ENSRNOP00000100694.1, ENSRNOT00000172636.1

  3. XM_039099237.2 → XP_038955165.1  protein FAM13C isoform X3

    UniProtKB/TrEMBL
    F1LUC1
    Related
    ENSRNOP00000048490.6, ENSRNOT00000051491.8

  4. XM_039099241.2 → XP_038955169.1  protein FAM13C isoform X5

    UniProtKB/TrEMBL
    A0A8I6AS96, F1LUC1

  5. XM_039099242.2 → XP_038955170.1  protein FAM13C isoform X5

    UniProtKB/TrEMBL
    A0A8I6AS96, F1LUC1

  6. XM_039099236.2 → XP_038955164.1  protein FAM13C isoform X2

    UniProtKB/TrEMBL
    F1LUC1

  7. XM_039099235.2 → XP_038955163.1  protein FAM13C isoform X1

    UniProtKB/TrEMBL
    F1LUC1
    Related
    ENSRNOP00000102387.1, ENSRNOT00000172689.1

  8. XM_063279080.1 → XP_063135150.1  protein FAM13C isoform X5

    UniProtKB/TrEMBL
    A0A8I6AS96, F1LUC1

  9. XM_063279082.1 → XP_063135152.1  protein FAM13C isoform X7

  10. XM_063279081.1 → XP_063135151.1  protein FAM13C isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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