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C2h1orf56 similar to human chromosome 1 open reading frame 56 [ Rattus norvegicus (Norway rat) ]

Gene ID: 295265, updated on 2-Nov-2024

Summary

Official Symbol
C2h1orf56provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 56provided by RGD
Primary source
RGD:1359334
See related
EnsemblRapid:ENSRNOG00000021656 AllianceGenome:RGD:1359334
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
MENT; RGD1359334
Summary
Predicted to be involved in regulation of cell population proliferation. Predicted to be located in extracellular region. Orthologous to human C1orf56 (chromosome 1 open reading frame 56). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 446.4) See more
Orthologs
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Genomic context

See C2h1orf56 in Genome Data Viewer
Location:
2q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (185503792..185507385, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (182814794..182818387, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (196411937..196415530, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene MLLT11, transcription factor 7 cofactor Neighboring gene CDC42 small effector 1 Neighboring gene BCL2 interacting protein like Neighboring gene prune exopolyphosphatase 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
protein MENT
Names
methylated in normal thymocytes protein
uncharacterized protein C1orf56 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007638.1NP_001007639.1  protein MENT precursor

    See identical proteins and their annotated locations for NP_001007639.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083828
    UniProtKB/Swiss-Prot
    Q5XI62
    UniProtKB/TrEMBL
    A0A8L2QUG9, A6K2X5
    Related
    ENSRNOP00000059268.3, ENSRNOT00000064238.4
    Conserved Domains (1) summary
    pfam15322
    Location:31341
    PMSI1; Protein missing in infertile sperm 1, putative

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    185503792..185507385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)