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Ankrd34a ankyrin repeat domain 34A [ Rattus norvegicus (Norway rat) ]

Gene ID: 295283, updated on 2-Nov-2024

Summary

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Official Symbol
Ankrd34aprovided by RGD
Official Full Name
ankyrin repeat domain 34Aprovided by RGD
Primary source
RGD:1308412
See related
EnsemblRapid:ENSRNOG00000033741 AllianceGenome:RGD:1308412
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ankrd34; RGD1308412
Summary
Orthologous to human ANKRD34A (ankyrin repeat domain 34A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 34.4), Heart (RPKM 7.7) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankrd34a in Genome Data Viewer
Location:
2q34
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (186818496..186823921)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (184129830..184135075)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (198720277..198725155)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene thioredoxin interacting protein Neighboring gene RNA polymerase III subunit GL Neighboring gene limb and CNS expressed 1 like Neighboring gene high mobility group protein B1-like Neighboring gene RNA binding motif protein 8A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 34A
Names
ankyrin repeat domain 34

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024980.1 → NP_001020151.1  ankyrin repeat domain-containing protein 34A

    See identical proteins and their annotated locations for NP_001020151.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091343
    UniProtKB/Swiss-Prot
    Q5BJT1
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    186818496..186823921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039102051.2 → XP_038957979.1  ankyrin repeat domain-containing protein 34A isoform X1

    UniProtKB/Swiss-Prot
    Q5BJT1
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]

  2. XM_063281626.1 → XP_063137696.1  ankyrin repeat domain-containing protein 34A isoform X1

    UniProtKB/Swiss-Prot
    Q5BJT1
    Related
    ENSRNOP00000053081.2, ENSRNOT00000043535.5

  3. XM_008761283.4 → XP_008759505.1  ankyrin repeat domain-containing protein 34A isoform X1

    See identical proteins and their annotated locations for XP_008759505.1

    UniProtKB/Swiss-Prot
    Q5BJT1
    Related
    ENSRNOP00000105422.1, ENSRNOT00000134089.1
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]

  4. XM_039102052.2 → XP_038957980.1  ankyrin repeat domain-containing protein 34A isoform X1

    UniProtKB/Swiss-Prot
    Q5BJT1
    Related
    ENSRNOP00000111004.1, ENSRNOT00000151585.1
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]

  5. XM_039102050.2 → XP_038957978.1  ankyrin repeat domain-containing protein 34A isoform X1

    UniProtKB/Swiss-Prot
    Q5BJT1
    Related
    ENSRNOP00000110106.1, ENSRNOT00000162962.1
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BJT1.1 GenPept UniProtKB/Swiss-Prot:Q5BJT1

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