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Cstpp1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 295930, updated on 2-Nov-2024

Summary

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Official Symbol
Cstpp1provided by RGD
Official Full Name
centriolar satellite-associated tubulin polyglutamylase complex regulator 1provided by RGD
Primary source
RGD:1309540
See related
EnsemblRapid:ENSRNOG00000014798 AllianceGenome:RGD:1309540
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309540
Summary
Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in regulation of protein complex stability. Predicted to be located in cytoplasm and microtubule. Predicted to be active in centriolar satellite. Orthologous to human CSTPP1 (centriolar satellite-associated tubulin polyglutamylase complex regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 207.8), Testes (RPKM 106.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cstpp1 in Genome Data Viewer
Location:
3q24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (97704176..97872084, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (77247393..77416307, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (80092589..80349249, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene acid phosphatase 2, lysosomal Neighboring gene damage specific DNA binding protein 2 Neighboring gene protein kinase C and casein kinase substrate in neurons 3 Neighboring gene ADP-ribosylation factor GTPase activating protein 2 Neighboring gene uncharacterized LOC120101910 Neighboring gene U2 spliceosomal RNA Neighboring gene LDL receptor related protein 4 Neighboring gene uncharacterized LOC120101912 Neighboring gene uncharacterized LOC134486122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in regulation of protein complex stability ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
centriolar satellite-associated tubulin polyglutamylase complex regulator 1
Names
UPF0705 protein C11orf49 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013918.2 → NP_001013940.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform 1

    See identical proteins and their annotated locations for NP_001013940.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/Swiss-Prot
    Q5M9F0
    UniProtKB/TrEMBL
    A0A8L2QM69
    Related
    ENSRNOP00000083495.2, ENSRNOT00000115913.2

  2. NM_001429938.1 → NP_001416867.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

  3. NM_001429939.1 → NP_001416868.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I5ZL69

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    97704176..97872084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017591556.3 → XP_017447045.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X1

    Related
    ENSRNOP00000078631.2, ENSRNOT00000108550.2

  2. XM_039104523.2 → XP_038960451.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X5

  3. XM_063283294.1 → XP_063139364.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X6

  4. XM_039104520.2 → XP_038960448.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AK47

  5. XM_039104525.2 → XP_038960453.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X7

  6. XM_039104521.2 → XP_038960449.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AK47

  7. XM_063283295.1 → XP_063139365.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X7

  8. XM_063283296.1 → XP_063139366.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X8

  9. XM_039104522.2 → XP_038960450.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X4

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M9F0.1 GenPept UniProtKB/Swiss-Prot:Q5M9F0

Gene LinkOut

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