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Psmd5 proteasome 26S subunit, non-ATPase 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 296651, updated on 2-Nov-2024

Summary

Official Symbol
Psmd5provided by RGD
Official Full Name
proteasome 26S subunit, non-ATPase 5provided by RGD
Primary source
RGD:1308434
See related
EnsemblRapid:ENSRNOG00000018809 AllianceGenome:RGD:1308434
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in proteasome regulatory particle assembly. Predicted to be part of proteasome regulatory particle, base subcomplex. Orthologous to human PSMD5 (proteasome 26S subunit, non-ATPase 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 199.6), Liver (RPKM 152.8) and 9 other tissues See more
Orthologs
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Genomic context

See Psmd5 in Genome Data Viewer
Location:
3p11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (38531206..38552085, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (18133715..18151000, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (13916199..13937031, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 Neighboring gene beta-1,3-galactosyltransferase 9 Neighboring gene cutA divalent cation tolerance homolog-like Neighboring gene PHD finger protein 19 Neighboring gene RNA, U6 small nuclear 1256 Neighboring gene TNF receptor-associated factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General protein information

Preferred Names
26S proteasome non-ATPase regulatory subunit 5
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106569.2NP_001100039.2  26S proteasome non-ATPase regulatory subunit 5

    See identical proteins and their annotated locations for NP_001100039.2

    Status: VALIDATED

    Source sequence(s)
    BC166850, JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I5ZMJ6, A6JUD4, G3V8G2
    Related
    ENSRNOP00000025433.4, ENSRNOT00000025433.8
    Conserved Domains (1) summary
    pfam10508
    Location:1504
    Proteasom_PSMB; Proteasome non-ATPase 26S subunit

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    38531206..38552085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283521.1XP_063139591.1  26S proteasome non-ATPase regulatory subunit 5 isoform X1

    UniProtKB/TrEMBL
    A6JUD4, G3V8G2
  2. XM_063283520.1XP_063139590.1  26S proteasome non-ATPase regulatory subunit 5 isoform X1

    UniProtKB/TrEMBL
    A6JUD4, G3V8G2