U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Glcci1 glucocorticoid induced 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 296884, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Glcci1provided by RGD
Official Full Name
glucocorticoid induced 1provided by RGD
Primary source
RGD:1563612
See related
EnsemblRapid:ENSRNOG00000076831 AllianceGenome:RGD:1563612
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563612
Summary
Predicted to be active in cytoplasm. Orthologous to human GLCCI1 (glucocorticoid induced 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 772.8), Brain (RPKM 82.6) and 4 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
4q21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (37274271..37601898)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (36307956..36635614)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (34282625..34612709)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486727 Neighboring gene meiosis regulator for oocyte development Neighboring gene replication protein A3 Neighboring gene islet cell autoantigen 1 Neighboring gene uncharacterized LOC102550643 Neighboring gene neurexophilin 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. GLCCI1 is a novel component associated with the PI3K signaling pathway in podocyte foot processes. Kim SH, et al. Exp Mol Med, 2016 May 13. PMID 27174202, Free PMC Article
  2. Two genes, three messengers: hybrid transcript between a gene expressed at specific stages of T-cell and sperm maturation and an unrelated adjacent gene. Miazek A, et al. Immunogenetics, 2003 Jan. PMID 12557054
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GLCCI1 is a novel component associated with the PI3K signaling pathway in podocyte foot processes
    Title: GLCCI1 is a novel component associated with the PI3K signaling pathway in podocyte foot processes.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
glucocorticoid-induced transcript 1 protein
Names
glucocorticoid induced transcript 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177442.1 → NP_001170913.1  glucocorticoid-induced transcript 1 protein

    See identical proteins and their annotated locations for NP_001170913.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/TrEMBL
    A0A0G2JU60, B2RYK0
    Conserved Domains (1) summary
    pfam15388
    Location:51 → 360
    FAM117; Protein Family FAM117

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    37274271..37601898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107260.2 → XP_038963188.1  glucocorticoid-induced transcript 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I6ACU6
    Related
    ENSRNOP00000068976.3, ENSRNOT00000086735.3
    Conserved Domains (1) summary
    pfam15388
    Location:154 → 464
    FAM117; Protein Family FAM117

  2. XM_039107262.2 → XP_038963190.1  glucocorticoid-induced transcript 1 protein isoform X3

    Conserved Domains (1) summary
    pfam15388
    Location:154 → 389
    FAM117; Protein Family FAM117

  3. XM_039107261.2 → XP_038963189.1  glucocorticoid-induced transcript 1 protein isoform X2

    Conserved Domains (1) summary
    pfam15388
    Location:154 → 463
    FAM117; Protein Family FAM117

  4. XM_063285724.1 → XP_063141794.1  glucocorticoid-induced transcript 1 protein isoform X4

    UniProtKB/TrEMBL
    A6IDX5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools