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Clec2l C-type lectin domain family 2, member L [ Rattus norvegicus (Norway rat) ]

Gene ID: 296985, updated on 2-Nov-2024

Summary

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Official Symbol
Clec2lprovided by RGD
Official Full Name
C-type lectin domain family 2, member Lprovided by RGD
Primary source
RGD:1565373
See related
EnsemblRapid:ENSRNOG00000029644 AllianceGenome:RGD:1565373
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565373
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Orthologous to human CLEC2L (C-type lectin domain family 2 member L). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 406.4), Spleen (RPKM 99.1) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Clec2l in Genome Data Viewer
Location:
4q23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (68359021..68381431)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (67392118..67414539)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (66404880..66421656)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein E-like Neighboring gene insulin-induced gene 1 protein-like Neighboring gene LUC7-like 2 pre-mRNA splicing factor Neighboring gene small nuclear ribonucleoprotein Sm D1-like Neighboring gene killer cell lectin like receptor G2 Neighboring gene homeodomain interacting protein kinase 2 Neighboring gene thromboxane A synthase 1 Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-type lectin domain family 2 member L
Names
C-type lectin domain family, member L
CD69-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044233.2 → NP_001037698.2  C-type lectin domain family 2 member L

    See identical proteins and their annotated locations for NP_001037698.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/Swiss-Prot
    Q0ZCA7
    UniProtKB/TrEMBL
    A6IES9
    Related
    ENSRNOP00000099071.1, ENSRNOT00000171496.1
    Conserved Domains (1) summary
    cd03593
    Location:97 → 207
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    68359021..68381431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107295.2 → XP_038963223.1  C-type lectin domain family 2 member L isoform X2

    Related
    ENSRNOP00000103793.1, ENSRNOT00000123376.1
    Conserved Domains (1) summary
    cd03593
    Location:53 → 163
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_017592533.3 → XP_017448022.1  C-type lectin domain family 2 member L isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0ZCA7.2 GenPept UniProtKB/Swiss-Prot:Q0ZCA7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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