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Mrps35 mitochondrial ribosomal protein S35 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297727, updated on 17-Aug-2024

Summary

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Official Symbol
Mrps35provided by RGD
Official Full Name
mitochondrial ribosomal protein S35provided by RGD
Primary source
RGD:1306720
See related
EnsemblRapid:ENSRNOG00000001842 AllianceGenome:RGD:1306720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS35 (mitochondrial ribosomal protein S35). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 132.3), Kidney (RPKM 95.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
4q44
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (181688715..181719403)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (179958067..179988752)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (181434793..181465318)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene PPFIA binding protein 1 Neighboring gene high mobility group protein B1-like Neighboring gene RAB15 effector protein Neighboring gene MANSC domain containing 4 Neighboring gene kelch-like family, member 42 Neighboring gene uncharacterized LOC134486873

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth. Mertz J, et al. Mol Cell Proteomics, 2015 Jul. PMID 25931508, Free PMC Article
  2. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  3. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein mS35
Names
28S ribosomal protein S35, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106628.3 → NP_001100098.1  small ribosomal subunit protein mS35

    See identical proteins and their annotated locations for NP_001100098.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6IN39, D4A9Z6
    Conserved Domains (1) summary
    cl40670
    Location:162 → 230
    PCRF; PCRF domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    181688715..181719403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107482.2 → XP_038963410.1  small ribosomal subunit protein mS35 isoform X5

    Conserved Domains (1) summary
    cl40670
    Location:162 → 208
    PCRF; PCRF domain

  2. XM_006237676.4 → XP_006237738.1  small ribosomal subunit protein mS35 isoform X1

    Related
    ENSRNOP00000110763.1, ENSRNOT00000170282.1
    Conserved Domains (1) summary
    pfam10213
    Location:160 → 228
    MRP-S28; Mitochondrial ribosomal subunit protein

  3. XM_006237677.3 → XP_006237739.1  small ribosomal subunit protein mS35 isoform X3

  4. XM_063285921.1 → XP_063141991.1  small ribosomal subunit protein mS35 isoform X6

  5. XM_063285920.1 → XP_063141990.1  small ribosomal subunit protein mS35 isoform X4

  6. XM_039107483.2 → XP_038963411.1  small ribosomal subunit protein mS35 isoform X7

  7. XM_017592600.2 → XP_017448089.1  small ribosomal subunit protein mS35 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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