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Dpy19l4 dpy-19 like 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297824, updated on 2-Nov-2024

Summary

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Official Symbol
Dpy19l4provided by RGD
Official Full Name
dpy-19 like 4provided by RGD
Primary source
RGD:1305828
See related
EnsemblRapid:ENSRNOG00000025416 AllianceGenome:RGD:1305828
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305828
Summary
Predicted to enable mannosyltransferase activity. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DPY19L4 (dpy-19 like 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 114.6), Kidney (RPKM 89.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Dpy19l4 in Genome Data Viewer
Location:
5q13
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (29148518..29208132, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (24351289..24410932, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (24503074..24560077, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tumor protein p53 inducible nuclear protein 1 Neighboring gene cyclin E2 Neighboring gene integrator complex subunit 8 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene ribosomal protein S23, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L4
Names
protein dpy-19 homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305280.1 → NP_001292209.1  probable C-mannosyltransferase DPY19L4

    See identical proteins and their annotated locations for NP_001292209.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6JFT1, D3Z939
    Related
    ENSRNOP00000034948.6, ENSRNOT00000037869.9
    Conserved Domains (1) summary
    pfam10034
    Location:60 → 713
    Dpy19; Q-cell neuroblast polarization

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    29148518..29208132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109411.2 → XP_038965339.1  probable C-mannosyltransferase DPY19L4 isoform X1

    UniProtKB/TrEMBL
    A6JFT2
    Conserved Domains (1) summary
    pfam10034
    Location:1 → 652
    Dpy19; Q-cell neuroblast polarisation

  2. XM_063287283.1 → XP_063143353.1  probable C-mannosyltransferase DPY19L4 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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